Mini Rosetta 3.45

Author	Message
robertmiles Send message Joined: 16 Jun 08 Posts: 1235 Credit: 14,372,156 RAC: 692	Message 74994 - Posted: 27 Jan 2013, 0:43:46 UTC - in response to Message 74989. Hi All Has everyone seen the post by David Kim requesting debug information regarding the apparent nVidia bug here?: https://boinc.bakerlab.org/rosetta/forum_thread.php?id=6177&nowrap=true#74982 Danny Note that that nVidia bug appears to occur under Linux only. ID: 74994 · Rating: 0 · rate: / Reply Quote

Mad_Max Send message Joined: 31 Dec 09 Posts: 209 Credit: 27,061,169 RAC: 11,146	Message 74995 - Posted: 27 Jan 2013, 1:32:39 UTC No "nVidia bug" seen on all major OS: windows XP, windows 7, few linux variations, Mac OS Fresh example om Mac OS: https://boinc.bakerlab.org/rosetta/show_host_detail.php?hostid=1529537 (last 10 tasks, all other fail due app download error) ID: 74995 · Rating: 0 · rate: / Reply Quote

GALAXY-VOYAGER Send message Joined: 25 Oct 12 Posts: 15 Credit: 47,437 RAC: 0	Message 75146 - Posted: 20 Feb 2013, 11:46:54 UTC - in response to Message 74994. Hi All Has everyone seen the post by David Kim requesting debug information regarding the apparent nVidia bug here?: https://boinc.bakerlab.org/rosetta/forum_thread.php?id=6177&nowrap=true#74982 Danny Note that that nVidia bug appears to occur under Linux only. I'm Running an Acer Aspire M1800 with Windows vista, and I'm contantly getting Errors with Nvidia. i've tried to search for updates, but it says that My Nvidia is Up To Date. It keeps having to close Nvidia. ID: 75146 · Rating: 0 · rate: / Reply Quote

Polian Send message Joined: 21 Sep 05 Posts: 152 Credit: 10,141,266 RAC: 0	Message 75150 - Posted: 20 Feb 2013, 18:15:04 UTC - in response to Message 75146. I'm Running an Acer Aspire M1800 with Windows vista, and I'm contantly getting Errors with Nvidia. i've tried to search for updates, but it says that My Nvidia is Up To Date. It keeps having to close Nvidia. It sounds like you are describing a problem unrelated to BOINC or Rosetta, as if you have an issue with your operating system and/or video driver installation. ID: 75150 · Rating: 0 · rate: / Reply Quote

microchip Send message Joined: 10 Nov 10 Posts: 10 Credit: 2,281,076 RAC: 2	Message 75151 - Posted: 20 Feb 2013, 20:08:50 UTC - in response to Message 74994. Hi All Has everyone seen the post by David Kim requesting debug information regarding the apparent nVidia bug here?: https://boinc.bakerlab.org/rosetta/forum_thread.php?id=6177&nowrap=true#74982 Danny Note that that nVidia bug appears to occur under Linux only. Ugh, I have yet to see it on my Linux machine... Team Belgium ID: 75151 · Rating: 0 · rate: / Reply Quote

[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2031 Credit: 10,130,620 RAC: 9,970	Message 75155 - Posted: 23 Feb 2013, 10:28:24 UTC Like in Ralph, all H3i-A2E2 wus have problems with screensaver... ID: 75155 · Rating: 0 · rate: / Reply Quote

Rabinovitch Send message Joined: 28 Apr 07 Posts: 28 Credit: 5,439,728 RAC: 0	Message 75347 - Posted: 11 Apr 2013, 5:24:03 UTC Hi all! I found that there appears tasks with "Validate error" on both my Linux and Windows PCs. I have described this problem already, but I thought that it is present only at my Linux machine. Example WU from Win7 box: https://boinc.bakerlab.org/rosetta/result.php?resultid=573733678 From Linux: https://boinc.bakerlab.org/rosetta/result.php?resultid=573992857 Is there any way to fix it? 'Cause I just worrying for (as they say here) science done by my PCs (so as consumed electricity) and going to waste... From Siberia with love! ID: 75347 · Rating: 0 · rate: / Reply Quote

Polian Send message Joined: 21 Sep 05 Posts: 152 Credit: 10,141,266 RAC: 0	Message 75348 - Posted: 11 Apr 2013, 15:01:48 UTC Last modified: 11 Apr 2013, 15:17:00 UTC Try using a shorter target run time. I use 12 hours personally. It looks like most of your tasks are finishing successfully. edit: I just looked over my recent results and there appears to be a batch of bad tasks in currently issued work. All of my failures but one were short running and terminated within a couple of minutes. ID: 75348 · Rating: 0 · rate: / Reply Quote

P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0	Message 75350 - Posted: 12 Apr 2013, 1:57:38 UTC Lots of errors, these 4 with the same error. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=522032571 cryo_be__chain_N_subrun_001_SAVE_ALL_OUT_IGNORE_THE_REST_78278_50_0 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=522023452 cryo_be__chain_f_l_subrun_001_SAVE_ALL_OUT_IGNORE_THE_REST_78273_63_1 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=522023894 cryo_be__chain_K_subrun_001_SAVE_ALL_OUT_IGNORE_THE_REST_78274_127_0 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=522023820 cryo_be__chain_K_subrun_001_SAVE_ALL_OUT_IGNORE_THE_REST_78274_60_0 ERROR: weights_.size() ERROR:: Exit from: src/numeric/random/WeightedSampler.cc line: 134 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish ========================================================== This 1 erred also. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=522161319 e6-52-1-29_mod_abinitio_SAVE_ALL_OUT_78300_706_0 ERROR: ERROR: FragmentIO: could not open file start.200.9mers ERROR:: Exit from: src/core/fragment/FragmentIO.cc line: 233 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish ( As they say in programming GARBAGE IN = GARBAGE OUT! ) ID: 75350 · Rating: 0 · rate: / Reply Quote

P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0	Message 75351 - Posted: 12 Apr 2013, 3:37:47 UTC Another 3 on another rig, same error. cryo_be__chain_K_subrun_001_SAVE_ALL_OUT_IGNORE_THE_REST_78274_99_0. cryo_be__chain_K_subrun_001_SAVE_ALL_OUT_IGNORE_THE_REST_78274_124_0. cryo_be__chain_M_subrun_001_SAVE_ALL_OUT_IGNORE_THE_REST_78281_418_0. ERROR: weights_.size() ERROR:: Exit from: src/numeric/random/WeightedSampler.cc line: 134 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish # cpu_run_time_pref: 21600 </stderr_txt> ID: 75351 · Rating: 0 · rate: / Reply Quote

[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2031 Credit: 10,130,620 RAC: 9,970	Message 75352 - Posted: 12 Apr 2013, 8:08:20 UTC Last modified: 12 Apr 2013, 8:08:37 UTC 574867308 ERROR: ERROR: FragmentIO: could not open file start.200.9mers ERROR:: Exit from: ......srccorefragmentFragmentIO.cc line: 233 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish ID: 75352 · Rating: 0 · rate: / Reply Quote

P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0	Message 75364 - Posted: 13 Apr 2013, 7:56:42 UTC Last modified: 13 Apr 2013, 8:04:41 UTC Bad batch of tasks! still out there. e6-52-1-46_abinitio_SAVE_ALL_OUT_78312_1036_0 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=522194572 ERROR: ERROR: FragmentIO: could not open file start.200.9mers ERROR:: Exit from: src/core/fragment/FragmentIO.cc line: 233 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish ================================== Some like this one are running O.K. e6-9-4-48_abinitio_SAVE_ALL_OUT_78317_1037_0 ID: 75364 · Rating: 0 · rate: / Reply Quote

[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2031 Credit: 10,130,620 RAC: 9,970	Message 75373 - Posted: 15 Apr 2013, 20:58:21 UTC 57540781 Server state Over Outcome Validate error Client state Done Exit status 0 (0x0) BOINC:: Worker startup. Starting watchdog... Watchdog active. # cpu_run_time_pref: 7200 ====================================================== DONE :: 1 starting structures 1201 cpu seconds This process generated 1 decoys from 1 attempts ====================================================== BOINC :: WS_max 0 BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish </stderr_txt> ]]> Validate state Invalid ID: 75373 · Rating: 0 · rate: / Reply Quote

robertmiles Send message Joined: 16 Jun 08 Posts: 1235 Credit: 14,372,156 RAC: 692	Message 75402 - Posted: 20 Apr 2013, 21:37:27 UTC Rosetta Mini 3.45 cryo_be__chain_H_subrun_000_SAVE_ALL_OUT_IGNORE_THE_REST_78252_282_1 Has already run almost 5 hours without writing any checkpoints at all. Claims to be 30.748% done. Claims to have almost 10 hours to completion, out of the 12 hours I've selected for these runs. Unclear if this is a problem or not. ID: 75402 · Rating: 0 · rate: / Reply Quote

P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0	Message 75425 - Posted: 22 Apr 2013, 23:22:23 UTC Hi. I'm seeing a few of these error out with the same problem. CASP9_fc_benchmark_hybridization_run55_T0542_0_D4_SAVE_ALL_OUT_IGNORE_THE_REST_48152_899_0 CASP9_fc_benchmark_hybridization_run55_T0547_0_C2_SAVE_ALL_OUT_IGNORE_THE_REST_48158_899_0 ERROR: error in process_residue_request: 'com' ERROR:: Exit from: src/core/conformation/symmetry/util.cc line: 93 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish ID: 75425 · Rating: 0 · rate: / Reply Quote

TJ Send message Joined: 29 Mar 09 Posts: 127 Credit: 4,799,890 RAC: 0	Message 75438 - Posted: 23 Apr 2013, 22:19:05 UTC - in response to Message 75402. Rosetta Mini 3.45 cryo_be__chain_H_subrun_000_SAVE_ALL_OUT_IGNORE_THE_REST_78252_282_1 Has already run almost 5 hours without writing any checkpoints at all. Claims to be 30.748% done. Claims to have almost 10 hours to completion, out of the 12 hours I've selected for these runs. Unclear if this is a problem or not. It seems that unless you crunch the cryo's on a Mac, they will error out. I crunch via Windows, so when I see a cryo I abort it immediately. Greetings, TJ. ID: 75438 · Rating: 0 · rate: / Reply Quote

robertmiles Send message Joined: 16 Jun 08 Posts: 1235 Credit: 14,372,156 RAC: 692	Message 75440 - Posted: 24 Apr 2013, 4:16:37 UTC - in response to Message 75425. Hi. I'm seeing a few of these error out with the same problem. CASP9_fc_benchmark_hybridization_run55_T0542_0_D4_SAVE_ALL_OUT_IGNORE_THE_REST_48152_899_0 CASP9_fc_benchmark_hybridization_run55_T0547_0_C2_SAVE_ALL_OUT_IGNORE_THE_REST_48158_899_0 ERROR: error in process_residue_request: 'com' ERROR:: Exit from: src/core/conformation/symmetry/util.cc line: 93 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish I've seen a number of BOINC projects use a zip utility that works properly in one direction, but usually gives an error if the other direction is tried. Could it be that problem again? ID: 75440 · Rating: 0 · rate: / Reply Quote

Brian Priebe Send message Joined: 27 Nov 09 Posts: 16 Credit: 33,020,247 RAC: 0	Message 75478 - Posted: 25 Apr 2013, 22:52:33 UTC - in response to Message 75425. Hi. I'm seeing a few of these error out with the same problem. CASP9_fc_benchmark_hybridization_run55_T0542_0_D4_SAVE_ALL_OUT_IGNORE_THE_REST_48152_899_0 CASP9_fc_benchmark_hybridization_run55_T0547_0_C2_SAVE_ALL_OUT_IGNORE_THE_REST_48158_899_0 ERROR: error in process_residue_request: 'com' ERROR:: Exit from: src/core/conformation/symmetry/util.cc line: 93 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish For me too, 90% of the CASP9 series bomb on this same error. ID: 75478 · Rating: 0 · rate: / Reply Quote